STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ54670.1Transketolase. (309 aa)    
Predicted Functional Partners:
SJZ54701.1
Transketolase.
 0.998
SJZ48854.1
Transketolase.
 0.994
SJZ38240.1
Transketolase.
 0.993
SJZ44565.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.764
SJZ34864.1
Pseudouridine kinase.
    
  0.620
SJZ42825.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.568
SJZ54647.1
Ferredoxin-nitrite reductase.
       0.568
SJZ37107.1
Ribose 5-phosphate isomerase B.
  
 
 0.473
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.452
SJZ48833.1
Transketolase.
  
  
 
0.443
Your Current Organism:
Cetobacterium ceti
NCBI taxonomy Id: 180163
Other names: ATCC 700028, C. ceti, NCFB 3026, NCIMB 703026, strain M-3333
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