STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ70172.1Unsaturated chondroitin disaccharide hydrolase. (396 aa)    
Predicted Functional Partners:
SJZ70137.1
Heparinase II/III-like protein.
 
    0.944
kduI
4-deoxy-L-threo-5-hexulose uronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.855
SJZ90020.1
Hyaluronate lyase.
  
 0.827
SJZ70071.1
Sulfatase.
  
  0.804
SJZ70006.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
   
 0.748
SJZ37638.1
Beta-galactosidase trimerisation domain-containing protein.
 
 
 0.663
SJZ89376.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.660
SJZ51030.1
Beta-galactosidase.
 
 
 0.644
SJZ90048.1
chondroitin-sulfate-ABC endolyase/exolyase.
 
  
 0.630
SJZ59113.1
Hypothetical protein.
 
 
  0.605
Your Current Organism:
Cetobacterium ceti
NCBI taxonomy Id: 180163
Other names: ATCC 700028, C. ceti, NCFB 3026, NCIMB 703026, strain M-3333
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