STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ86574.1Putrescine:ornithine antiporter. (439 aa)    
Predicted Functional Partners:
SJZ86565.1
Ornithine decarboxylase.
 
    0.927
SJZ79273.1
Arginine decarboxylase.
 
    0.732
SJZ86606.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
    0.520
SJZ89145.1
Protein of unknown function.
  
     0.508
SJZ67340.1
Head domain of trimeric autotransporter adhesin.
  
     0.464
SJZ86635.1
DNA polymerase-3 subunit epsilon.
  
    0.456
SJZ86658.1
D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.420
Your Current Organism:
Cetobacterium ceti
NCBI taxonomy Id: 180163
Other names: ATCC 700028, C. ceti, NCFB 3026, NCIMB 703026, strain M-3333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.