STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA03574.1Type II secretory pathway, component PulF. (387 aa)    
Predicted Functional Partners:
SKA03597.1
Protein transport protein HofB.
 
 0.997
SKA03555.1
General secretion pathway protein G.
  
  
 0.935
SKA03403.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.924
SKA03526.1
Type IV leader peptidase family protein.
  
  
 0.885
SJZ97354.1
Twitching motility protein PilT.
  
 0.853
SKA03433.1
Hypothetical protein.
       0.757
SKA03484.1
Hypothetical protein.
       0.757
SKA03495.1
Hypothetical protein.
       0.757
SKA03503.1
Hypothetical protein.
       0.757
SJZ44704.1
Hypothetical protein.
  
  
 0.746
Your Current Organism:
Cetobacterium ceti
NCBI taxonomy Id: 180163
Other names: ATCC 700028, C. ceti, NCFB 3026, NCIMB 703026, strain M-3333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.