STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGI11709.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)    
Predicted Functional Partners:
flpA
Hypothetical protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
 
 
 0.999
rps17e
30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.999
OGI11736.1
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
  0.999
OGI11737.1
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.999
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.999
rps4e
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS4 family.
 
   0.999
OGI11944.1
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS8 family.
  
  0.999
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.999
OGI11964.1
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the universal ribosomal protein uS13 family.
   
   0.999
OGI11661.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
Your Current Organism:
Micrarchaeota archaeon RBG16369
NCBI taxonomy Id: 1801632
Other names: C. Micrarchaeota archaeon RBG_16_36_9, Candidatus Micrarchaeota archaeon RBG_16_36_9
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