STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGW09001.1Ribosome biogenesis GTPase Der; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)    
Predicted Functional Partners:
OGW11802.1
Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
OGW09275.1
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.938
OGW09769.1
DNA primase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.914
OGW11529.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.842
OGW08415.1
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.717
OGW11181.1
Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.689
OGW09619.1
Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.686
A2W75_06635
GTPase HflX; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.648
OGW09203.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.629
OGW11518.1
SMC-Scp complex subunit ScpB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.619
Your Current Organism:
Nitrospinae bacterium RIFCSPLOWO2123915
NCBI taxonomy Id: 1801689
Other names: N. bacterium RIFCSPLOWO2_12_39_15, Nitrospinae bacterium RIFCSPLOWO2_12_39_15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.