STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGW09347.1leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (824 aa)    
Predicted Functional Partners:
OGW11368.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
OGW09344.1
DNA topoisomerase I; Catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.996
OGW09203.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.994
OGW11503.1
isoleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.991
OGW11089.1
proline--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
OGW09963.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.981
OGW11960.1
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.981
OGW08743.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.934
OGW11967.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.931
OGW09254.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.901
Your Current Organism:
Nitrospinae bacterium RIFCSPLOWO2123915
NCBI taxonomy Id: 1801689
Other names: N. bacterium RIFCSPLOWO2_12_39_15, Nitrospinae bacterium RIFCSPLOWO2_12_39_15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.