STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGW08852.1Thymidylate synthase, flavin-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
A2W75_08935
Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.762
OGW09447.1
2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.739
OGW09788.1
dTMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.735
OGW07672.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.715
glyA
Serine hydroxymethyltransferase; Catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.700
OGW09158.1
Glycine cleavage system protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.665
OGW07427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.656
OGW09854.1
Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.655
OGW10662.1
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.642
OGW11322.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.636
Your Current Organism:
Nitrospinae bacterium RIFCSPLOWO2123915
NCBI taxonomy Id: 1801689
Other names: N. bacterium RIFCSPLOWO2_12_39_15, Nitrospinae bacterium RIFCSPLOWO2_12_39_15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.