STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGW09044.1LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (359 aa)    
Predicted Functional Partners:
OGW09430.1
LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGW09045.1
LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 
0.900
OGW10802.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.842
OGW07427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.836
OGW09382.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.829
OGW09198.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.814
OGW09437.1
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.808
OGW10363.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.807
OGW08017.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.773
OGW07537.1
Lipid A export permease/ATP-binding protein MsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.766
Your Current Organism:
Nitrospinae bacterium RIFCSPLOWO2123915
NCBI taxonomy Id: 1801689
Other names: N. bacterium RIFCSPLOWO2_12_39_15, Nitrospinae bacterium RIFCSPLOWO2_12_39_15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.