STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ31195.1single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (565 aa)    
Predicted Functional Partners:
OGZ31196.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.879
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
    
 
 0.788
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.717
OGZ31194.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.717
OGZ31190.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
     
 0.711
OGZ31273.1
Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
OGZ31192.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
OGZ31191.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
OGZ30526.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.563
OGZ31159.1
Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.526
Your Current Organism:
Niyogibacteria bacterium RIFCSPLOWO202FULL4513
NCBI taxonomy Id: 1801725
Other names: C. Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13, Candidatus Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13
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