STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ30489.1tyrosine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)    
Predicted Functional Partners:
OGZ30179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.701
OGZ30172.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the phosphoglycerate mutase family.
  
  
 0.687
argS
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.610
OGZ30488.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.604
OGZ31599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.575
OGZ31680.1
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.562
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
 
 0.542
OGZ30175.1
glycine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.532
OGZ31623.1
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IMPDH/GMPR family.
  
  
 0.515
OGZ30642.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.498
Your Current Organism:
Niyogibacteria bacterium RIFCSPLOWO202FULL4513
NCBI taxonomy Id: 1801725
Other names: C. Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13, Candidatus Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.