STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3B72_01995Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (318 aa)    
Predicted Functional Partners:
OGW80527.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.830
A3B72_06100
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
   
 
 0.818
OGW79363.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.713
OGW79087.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.706
OGW79821.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.694
OGW81912.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.685
OGW81397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.675
OGW79965.1
Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.665
OGW80520.1
UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.631
OGW81958.1
NAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.625
Your Current Organism:
Omnitrophica bacterium RIFCSPHIGHO202FULL4528
NCBI taxonomy Id: 1801819
Other names: O. bacterium RIFCSPHIGHO2_02_FULL_45_28, Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_45_28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.