STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGJ16535.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
OGJ15907.1
50S ribosomal protein L7ae; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OGJ16162.1
50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.999
OGJ16173.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.999
rpl24
50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
   
 
 0.999
OGJ16191.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.999
OGJ16888.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.999
OGJ16891.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
rpl31e
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribosomal protein L31e family.
   
 
 0.997
OGJ16170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.997
OGJ16188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.996
Your Current Organism:
Pacearchaeota archaeon
NCBI taxonomy Id: 1801880
Other names: C. Pacearchaeota archaeon RBG_13_33_26, Candidatus Pacearchaeota archaeon RBG_13_33_26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.