STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGJ17053.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (117 aa)    
Predicted Functional Partners:
OGJ17054.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.639
tbp
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
       0.608
lig
Hypothetical protein; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
       0.487
OGJ17050.1
Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
OGJ17067.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MCM family.
       0.415
Your Current Organism:
Pacearchaeota archaeon
NCBI taxonomy Id: 1801880
Other names: C. Pacearchaeota archaeon RBG_13_33_26, Candidatus Pacearchaeota archaeon RBG_13_33_26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.