STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001189915_00086Unannotated protein. (243 aa)    
Predicted Functional Partners:
GCA_001189915_00088
Unannotated protein.
 
 
  0.987
GCA_001189915_00087
Unannotated protein.
 
 0.960
GCA_001189915_01747
Unannotated protein.
    
 
0.896
GCA_001189915_04214
Unannotated protein.
 
 
  0.890
GCA_001189915_01578
Unannotated protein.
    
  0.884
GCA_001189915_01943
Unannotated protein.
    
  0.884
GCA_001189915_02284
Unannotated protein.
 
 
 0.882
GCA_001189915_04774
Unannotated protein.
 
 0.880
GCA_001189915_04953
Unannotated protein.
  
  
 
0.880
GCA_001189915_03550
Unannotated protein.
 
 0.879
Your Current Organism:
Herbaspirillum autotrophicum
NCBI taxonomy Id: 180195
Other names: ATCC 29984, Aquaspirillum autotrophicum, CCUG 12808, DSM 732, H. autotrophicum, IAM 14942, JCM 21424, LMG 4326, LMG:4326, NBRC 15327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.