STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001189915_04492Unannotated protein. (188 aa)    
Predicted Functional Partners:
GCA_001189915_01142
Unannotated protein.
   
 
 0.918
GCA_001189915_02300
Unannotated protein.
   
 
 0.918
GCA_001189915_04510
Unannotated protein.
 
     0.799
GCA_001189915_02460
Unannotated protein.
     
 0.768
GCA_001189915_03396
Unannotated protein.
     
 0.707
GCA_001189915_03545
Unannotated protein.
     
 0.630
GCA_001189915_00059
Unannotated protein.
    
  0.628
GCA_001189915_03689
Unannotated protein.
   
 0.617
GCA_001189915_04493
Unannotated protein.
       0.610
GCA_001189915_03739
Unannotated protein.
    
 0.606
Your Current Organism:
Herbaspirillum autotrophicum
NCBI taxonomy Id: 180195
Other names: ATCC 29984, Aquaspirillum autotrophicum, CCUG 12808, DSM 732, H. autotrophicum, IAM 14942, JCM 21424, LMG 4326, LMG:4326, NBRC 15327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.