STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ94687.1D-sedoheptulose 7-phosphate isomerase. (192 aa)    
Predicted Functional Partners:
SER62700.1
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.
 
 
 0.971
SEQ38258.1
D-alpha,beta-D-heptose 7-phosphate 1-kinase.
 
  
 0.968
SEQ38322.1
rfaE bifunctional protein, domain II.
  
 0.900
SEQ94720.1
Osmotically-inducible protein OsmY, contains BON domain.
  
    0.886
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.829
SEQ38423.1
Heptosyltransferase-2.
 
  
 0.818
SEQ94651.1
Putative endonuclease; Belongs to the UPF0102 family.
  
  
 0.793
SEQ74926.1
Regulatory inactivation of DnaA Hda protein; Belongs to the DnaA family.
   
 
 0.779
SER01104.1
Protein of unknown function.
    
 
 0.775
SER18904.1
TIR domain-containing protein.
    
 
 0.771
Your Current Organism:
Giesbergeria anulus
NCBI taxonomy Id: 180197
Other names: ATCC 35958, Aquaspirillum anulus, CCUG 49446, G. anulus, IAM 14948, JCM 21430, NBRC 14917, NCIMB 9012, Spirillum anulus
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