STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER13305.1Transcriptional regulator, Crp/Fnr family. (248 aa)    
Predicted Functional Partners:
SEQ68199.1
Adenylate cyclase.
   
 0.928
SER07623.1
Adenylate cyclase.
   
 0.928
SER59343.1
Cyclic nucleotide-binding domain-containing protein.
  
  
 0.868
SEQ94840.1
Cyclic nucleotide-binding domain-containing protein.
  
  
 0.861
SEQ80393.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.847
SEQ28547.1
PAS domain S-box-containing protein.
   
 0.846
SER28191.1
PAS domain S-box-containing protein.
   
 0.846
SEQ92410.1
Hypothetical protein.
 
 
 
 0.839
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.809
SEQ76336.1
Hypothetical protein.
   
 
 0.807
Your Current Organism:
Giesbergeria anulus
NCBI taxonomy Id: 180197
Other names: ATCC 35958, Aquaspirillum anulus, CCUG 49446, G. anulus, IAM 14948, JCM 21430, NBRC 14917, NCIMB 9012, Spirillum anulus
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