STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (204 aa)    
Predicted Functional Partners:
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.793
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
   0.752
SER26017.1
Flagellar motor switch protein FliM.
    
   0.744
SEQ62202.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
   0.734
SEQ26163.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 
 0.724
SEQ16649.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
   0.717
SEQ31021.1
Membrane-bound lytic murein transglycosylase D.
  
  
 0.601
SER66655.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.587
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.575
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
 
 
 0.531
Your Current Organism:
Giesbergeria anulus
NCBI taxonomy Id: 180197
Other names: ATCC 35958, Aquaspirillum anulus, CCUG 49446, G. anulus, IAM 14948, JCM 21430, NBRC 14917, NCIMB 9012, Spirillum anulus
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