STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER75580.1HDOD domain-containing protein. (290 aa)    
Predicted Functional Partners:
SEQ28547.1
PAS domain S-box-containing protein.
   
 0.874
SER28191.1
PAS domain S-box-containing protein.
   
 0.874
SER53210.1
TPR repeat-containing protein.
 
 
   0.773
SER13838.1
Signal transduction histidine kinase.
   
 0.771
SER00512.1
Hypothetical protein.
   
 
 0.770
SEQ32039.1
Two-component system, cell cycle response regulator DivK.
   
 0.667
SEQ11269.1
PAS domain S-box-containing protein.
   
 0.636
SEQ73242.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
  0.628
SEQ35453.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
  0.608
SEQ72895.1
Two-component system, chemotaxis family, response regulator CheV.
 
 
   0.607
Your Current Organism:
Giesbergeria anulus
NCBI taxonomy Id: 180197
Other names: ATCC 35958, Aquaspirillum anulus, CCUG 49446, G. anulus, IAM 14948, JCM 21430, NBRC 14917, NCIMB 9012, Spirillum anulus
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