node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OHB88823.1 | nusA | A3D13_06175 | A3D13_00465 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.854 |
OHB88823.1 | rplE | A3D13_06175 | A3D13_07790 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.815 |
OHB88823.1 | rplF | A3D13_06175 | A3D13_07780 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.824 |
OHB88823.1 | rplJ | A3D13_06175 | A3D13_07530 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.810 |
OHB88823.1 | rplK | A3D13_06175 | A3D13_07520 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.826 |
OHB88823.1 | rplL | A3D13_06175 | A3D13_07535 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.811 |
OHB88823.1 | rplN | A3D13_06175 | A3D13_07800 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.821 |
OHB88823.1 | rpoB | A3D13_06175 | A3D13_07540 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.858 |
OHB88823.1 | rpsG | A3D13_06175 | A3D13_07555 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.816 |
OHB88823.1 | rpsH | A3D13_06175 | A3D13_07785 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.825 |
nusA | OHB88823.1 | A3D13_00465 | A3D13_06175 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.854 |
nusA | rplE | A3D13_00465 | A3D13_07790 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.892 |
nusA | rplF | A3D13_00465 | A3D13_07780 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.925 |
nusA | rplJ | A3D13_00465 | A3D13_07530 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.909 |
nusA | rplK | A3D13_00465 | A3D13_07520 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.995 |
nusA | rplL | A3D13_00465 | A3D13_07535 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.736 |
nusA | rplN | A3D13_00465 | A3D13_07800 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.883 |
nusA | rpoB | A3D13_00465 | A3D13_07540 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
nusA | rpsG | A3D13_00465 | A3D13_07555 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.977 |
nusA | rpsH | A3D13_00465 | A3D13_07785 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.964 |