STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ32590.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)    
Predicted Functional Partners:
OGZ32333.1
Hypothetical protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
 
 0.977
speE
Hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
  
  0.961
OGZ32205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.934
OGZ32216.1
5'-methylthioadenosine phosphorylase; Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; Sulfolobus solfataricus has two 5'-methylthioadenosine phosphorylases; 5'-methylthioadenosine phosphorylase II has a higher affinity for 5'-deoxy-5'-methylthioadenosine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.924
OGZ32252.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.870
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.799
OGZ32588.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.775
OGZ32985.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.694
OGZ31821.1
RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.635
OGZ32687.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.617
Your Current Organism:
Portnoybacteria bacterium RBG13408
NCBI taxonomy Id: 1801990
Other names: C. Portnoybacteria bacterium RBG_13_40_8, Candidatus Portnoybacteria bacterium RBG_13_40_8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.