STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHC53265.1Nitrogen fixation protein NifS; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)    
Predicted Functional Partners:
OHC54589.1
Iron-sulfur cluster assembly scaffold protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.987
OHC54411.1
Cysteine desufuration protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.899
OHC52611.1
Fe-S cluster assembly ATPase SufC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.883
OHC52614.1
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.821
OHC52610.1
Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.817
gcvP
Glycine dehydrogenase (aminomethyl-transferring); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.770
OHC57067.1
Selenide, water dikinase SelD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.762
OHC52615.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.753
OHC53732.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.720
OHC57048.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.720
Your Current Organism:
Rhodobacterales bacterium RIFCSPHIGHO202FULL62130
NCBI taxonomy Id: 1802014
Other names: R. bacterium RIFCSPHIGHO2_02_FULL_62_130, Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130
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