STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ43453.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (103 aa)    
Predicted Functional Partners:
OGZ43454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Nudix hydrolase family.
       0.682
OGZ43455.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.682
OGZ43451.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.469
OGZ43452.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.469
OGZ43449.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.415
tgt
Hypothetical protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...]
       0.415
Your Current Organism:
Ryanbacteria bacterium RIFCSPHIGHO201FULL4522
NCBI taxonomy Id: 1802114
Other names: C. Ryanbacteria bacterium RIFCSPHIGHO2_01_FULL_45_22, Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_01_FULL_45_22
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