STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHC86148.1serine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)    
Predicted Functional Partners:
OHC87005.1
tRNA (guanosine(46)-N7)-methyltransferase TrmB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.957
OHC84449.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.864
OHC84530.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.864
OHC84539.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.864
OHC86468.1
phenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.840
OHC84960.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
OHC84761.1
histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.805
OHC85262.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.750
OHC85303.1
threonine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.748
OHC86261.1
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.723
Your Current Organism:
Sphingobacteriia bacterium RIFOXYC2FULL3518
NCBI taxonomy Id: 1802166
Other names: S. bacterium RIFOXYC2_FULL_35_18, Sphingobacteriia bacterium RIFOXYC2_FULL_35_18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.