STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHC85840.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
OHC85798.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.856
OHC84228.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
OHC85660.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.783
OHC85300.1
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.776
OHC85108.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.775
OHC85311.1
Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.774
OHC86028.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.770
OHC85397.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.760
OHC84893.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
OHC84889.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.757
Your Current Organism:
Sphingobacteriia bacterium RIFOXYC2FULL3518
NCBI taxonomy Id: 1802166
Other names: S. bacterium RIFOXYC2_FULL_35_18, Sphingobacteriia bacterium RIFOXYC2_FULL_35_18
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.