STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHC84696.1Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)    
Predicted Functional Partners:
OHC84324.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.882
OHC85101.1
Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.822
OHC84477.1
Galactose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.809
OHC84663.1
Glucosylceramidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.800
OHC86355.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.789
OHC84422.1
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.788
OHC84138.1
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.773
OHC84500.1
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.749
OHC84479.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.719
araD
L-ribulose-5-phosphate 4-epimerase; Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.717
Your Current Organism:
Sphingobacteriia bacterium RIFOXYC2FULL3518
NCBI taxonomy Id: 1802166
Other names: S. bacterium RIFOXYC2_FULL_35_18, Sphingobacteriia bacterium RIFOXYC2_FULL_35_18
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