STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHC84842.1tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
OHC84467.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.664
OHC84843.1
Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.659
OHC86024.1
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.637
OHC86754.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.605
OHC86148.1
serine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.601
OHC86900.1
methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.575
OHC86720.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.558
OHC84239.1
Elongation factor 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.555
OHC84934.1
ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.552
OHC86818.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.550
Your Current Organism:
Sphingobacteriia bacterium RIFOXYC2FULL3518
NCBI taxonomy Id: 1802166
Other names: S. bacterium RIFOXYC2_FULL_35_18, Sphingobacteriia bacterium RIFOXYC2_FULL_35_18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.