STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmI16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (224 aa)    
Predicted Functional Partners:
OHD12733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
OHD12734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.786
OHD07256.1
uroporphyrinogen-III C-methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.768
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
      0.666
OHD12730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.640
OHD12731.1
Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.605
OHD09200.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.569
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  
 0.539
OHD11092.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   0.528
OHD12735.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.511
Your Current Organism:
Spirochaetes bacterium GWB13613
NCBI taxonomy Id: 1802174
Other names: S. bacterium GWB1_36_13, Spirochaetes bacterium GWB1_36_13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.