STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ64384.1Deoxyhypusine synthase; Transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the deoxyhypusine synthase family. (343 aa)    
Predicted Functional Partners:
OGZ64383.1
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
     
 0.840
OGZ64385.1
Arginine decarboxylase, pyruvoyl-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.801
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.621
OGZ64386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.570
glyQS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.535
OGZ64381.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.526
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.469
OGZ64388.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.469
Your Current Organism:
Staskawiczbacteria bacterium RIFCSPHIGHO201FULL3616
NCBI taxonomy Id: 1802200
Other names: C. Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_36_16, Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_36_16
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.