STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ80108.1Protein-export membrane protein SecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
OGZ80109.1
Protein-export membrane protein SecD; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.999
OGZ80702.1
Preprotein translocase subunit SecY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.992
OGZ80342.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.991
OGZ80791.1
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.977
OGZ80516.1
Preprotein translocase subunit SecE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
OGZ80123.1
Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.870
OGZ80788.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.828
OGZ80107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.665
OGZ80792.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.608
OGZ80224.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.596
Your Current Organism:
Staskawiczbacteria bacterium RIFOXYB1FULL3837
NCBI taxonomy Id: 1802224
Other names: C. Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37, Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.