STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGZ80478.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)    
Predicted Functional Partners:
OGZ80343.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.986
OGZ80477.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.979
OGZ80302.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.908
OGZ80079.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.833
OGZ80367.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.825
OGZ80813.1
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.671
OGZ80520.1
tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.613
OGZ80176.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.571
OGZ80802.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.562
OGZ80172.1
50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.522
Your Current Organism:
Staskawiczbacteria bacterium RIFOXYB1FULL3837
NCBI taxonomy Id: 1802224
Other names: C. Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37, Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.