Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| A3C07_01615 | OHA00437.1 | A3C07_01615 | A3C07_01120 | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.456 |
| A3C07_01615 | hisH | A3C07_01615 | A3C07_03850 | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Imidazole glycerol phosphate synthase subunit HisH; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.464 |
| A3C07_01615 | rpoB | A3C07_01615 | A3C07_00680 | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| A3C07_01615 | rpsJ | A3C07_01615 | A3C07_01810 | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| A3C07_01615 | tig | A3C07_01615 | A3C07_03115 | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.432 |
| A3C07_01680 | OHA00437.1 | A3C07_01680 | A3C07_01120 | Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.618 |
| OGZ98596.1 | OHA00437.1 | A3C07_04035 | A3C07_01120 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| OGZ98596.1 | guaA | A3C07_04035 | A3C07_00985 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.438 |
| OGZ98596.1 | hisH | A3C07_04035 | A3C07_03850 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Imidazole glycerol phosphate synthase subunit HisH; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.464 |
| OGZ98596.1 | rplA | A3C07_04035 | A3C07_03310 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.858 |
| OGZ98596.1 | rpoB | A3C07_04035 | A3C07_00680 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.468 |
| OGZ98596.1 | rpsJ | A3C07_04035 | A3C07_01810 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.977 |
| OGZ98596.1 | tig | A3C07_04035 | A3C07_03115 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.597 |
| OHA00436.1 | OHA00437.1 | A3C07_01115 | A3C07_01120 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.538 |
| OHA00437.1 | A3C07_01615 | A3C07_01120 | A3C07_01615 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.456 |
| OHA00437.1 | A3C07_01680 | A3C07_01120 | A3C07_01680 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.618 |
| OHA00437.1 | OGZ98596.1 | A3C07_01120 | A3C07_04035 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.577 |
| OHA00437.1 | OHA00436.1 | A3C07_01120 | A3C07_01115 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.538 |
| OHA00437.1 | guaA | A3C07_01120 | A3C07_00985 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.646 |
| OHA00437.1 | hisH | A3C07_01120 | A3C07_03850 | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Imidazole glycerol phosphate synthase subunit HisH; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.460 |
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