STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
murCUDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (426 aa)    
Predicted Functional Partners:
A2114_02620
tRNA-Ile; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
0.998
OHA56779.1
Hypothetical protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 0.996
OHA57235.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.983
A2114_00750
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
 
 
 0.836
OHA57882.1
Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
 
 
 0.795
OHA57239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.787
OHA57236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OHA57190.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.768
OHA57238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.768
OHA57240.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.756
Your Current Organism:
Vogelbacteria bacterium GWA15114
NCBI taxonomy Id: 1802435
Other names: C. Vogelbacteria bacterium GWA1_51_14, Candidatus Vogelbacteria bacterium GWA1_51_14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.