Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OHA62071.1 | OHA62079.1 | A2117_00310 | A2117_00355 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.723 |
| OHA62071.1 | OHA62336.1 | A2117_00310 | A2117_00505 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| OHA62071.1 | dnaJ | A2117_00310 | A2117_00255 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, Dna [...] | 0.683 |
| OHA62071.1 | infA | A2117_00310 | A2117_00290 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.922 |
| OHA62071.1 | rplM | A2117_00310 | A2117_00320 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| OHA62071.1 | rplQ | A2117_00310 | A2117_00315 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| OHA62071.1 | rpsD | A2117_00310 | A2117_00305 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| OHA62071.1 | rpsI | A2117_00310 | A2117_00325 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| OHA62071.1 | rpsK | A2117_00310 | A2117_00300 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| OHA62071.1 | rpsM | A2117_00310 | A2117_00295 | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
| OHA62079.1 | OHA62071.1 | A2117_00355 | A2117_00310 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.723 |
| OHA62079.1 | OHA62336.1 | A2117_00355 | A2117_00505 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| OHA62079.1 | dnaJ | A2117_00355 | A2117_00255 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, Dna [...] | 0.538 |
| OHA62079.1 | infA | A2117_00355 | A2117_00290 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.423 |
| OHA62079.1 | rplM | A2117_00355 | A2117_00320 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| OHA62079.1 | rplQ | A2117_00355 | A2117_00315 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| OHA62079.1 | rpsD | A2117_00355 | A2117_00305 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| OHA62079.1 | rpsI | A2117_00355 | A2117_00325 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| OHA62079.1 | rpsK | A2117_00355 | A2117_00300 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| OHA62079.1 | rpsM | A2117_00355 | A2117_00295 | Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
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