STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGM70072.1valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (702 aa)    
Predicted Functional Partners:
tsaD
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
  
 0.896
OGM70730.1
isoleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
0.856
leuS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
0.813
OGM70300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.761
OGM70074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.733
OGM70147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.721
OGM70506.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.695
A2975_01085
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.679
OGM70075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.672
OGM70076.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.672
Your Current Organism:
Woesebacteria bacterium RIFCSPLOWO201FULL4414
NCBI taxonomy Id: 1802525
Other names: C. Woesebacteria bacterium RIFCSPLOWO2_01_FULL_44_14, Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_44_14
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