STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGC20391.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)    
Predicted Functional Partners:
OGC20390.1
3-dehydroquinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OGC20576.1
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.988
OGC20083.1
Type II 3-dehydroquinate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.925
OGC20957.1
Chorismate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.917
OGC19145.1
3-phosphoshikimate 1-carboxyvinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.896
OGC20389.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.795
OGC20938.1
tyrosine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.794
OGC19150.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.776
OGC20059.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.776
OGC20386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
Your Current Organism:
candidate division WOR1 bacterium RIFOXYB2FULL4645
NCBI taxonomy Id: 1802582
Other names: c. division WOR-1 bacterium RIFOXYB2_FULL_46_45, candidate division WOR-1 bacterium RIFOXYB2_FULL_46_45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.