STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (210 aa)    
Predicted Functional Partners:
OGC35050.1
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
 0.999
OGC36963.1
Pyruvate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.748
OGC36964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.703
OGC36962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.675
porA
Pyruvate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.649
OGC36960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.647
OGC36966.1
Pyruvate ferredoxin oxidoreductase; Catalyzes the formation of acetyl-CoA from pyruvate and coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.622
OGC36968.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.606
OGC36967.1
DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
  
 0.560
OGC33332.1
methionine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.502
Your Current Organism:
candidate division WOR1 bacterium RIFOXYB2FULL487
NCBI taxonomy Id: 1802583
Other names: c. division WOR-1 bacterium RIFOXYB2_FULL_48_7, candidate division WOR-1 bacterium RIFOXYB2_FULL_48_7
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