node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OGY21954.1 | OGY22278.1 | A2113_01050 | A2113_03360 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.755 |
OGY21954.1 | prfB | A2113_01050 | A2113_04115 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.991 |
OGY21954.1 | rplP | A2113_01050 | A2113_01165 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
OGY21954.1 | rplQ | A2113_01050 | A2113_01060 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.999 |
OGY21954.1 | rpsE | A2113_01050 | A2113_01115 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
OGY21954.1 | secY | A2113_01050 | A2113_01105 | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.906 |
OGY22278.1 | OGY21954.1 | A2113_03360 | A2113_01050 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. | 0.755 |
OGY22278.1 | OGY22279.1 | A2113_03360 | A2113_03365 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.914 |
OGY22278.1 | atpE | A2113_03360 | A2113_00620 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | ATP synthase F0 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.855 |
OGY22278.1 | prfB | A2113_03360 | A2113_04115 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.754 |
OGY22278.1 | rplP | A2113_03360 | A2113_01165 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.771 |
OGY22278.1 | rplQ | A2113_03360 | A2113_01060 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.755 |
OGY22278.1 | rpsE | A2113_03360 | A2113_01115 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.776 |
OGY22278.1 | secD | A2113_03360 | A2113_00785 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.958 |
OGY22278.1 | secF | A2113_03360 | A2113_00780 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.948 |
OGY22278.1 | secY | A2113_03360 | A2113_01105 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.944 |
OGY22279.1 | OGY22278.1 | A2113_03365 | A2113_03360 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.914 |
atpE | OGY22278.1 | A2113_00620 | A2113_03360 | ATP synthase F0 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.855 |
atpE | rplP | A2113_00620 | A2113_01165 | ATP synthase F0 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.718 |
atpE | rplQ | A2113_00620 | A2113_01060 | ATP synthase F0 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.400 |