STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGC69717.1DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (722 aa)    
Predicted Functional Partners:
OGC69472.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.999
OGC69256.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.999
OGC69697.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.960
OGC69979.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.901
OGC69782.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.895
OGC69948.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.835
OGC69064.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.833
OGC69892.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.825
OGC69787.1
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.809
OGC69460.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.791
Your Current Organism:
candidate division WWE3 bacterium RIFOXYB1FULL4324
NCBI taxonomy Id: 1802640
Other names: c. division WWE3 bacterium RIFOXYB1_FULL_43_24, candidate division WWE3 bacterium RIFOXYB1_FULL_43_24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.