STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGC68779.1UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
OGC68749.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.981
OGC69416.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
OGC69365.1
NAD-dependent epimerase; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.852
OGC69862.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.851
A2380_00145
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
    
 0.805
OGC68908.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.785
OGC68780.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.779
OGC69369.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.740
OGC69044.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.693
OGC69384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.642
Your Current Organism:
candidate division WWE3 bacterium RIFOXYB1FULL4324
NCBI taxonomy Id: 1802640
Other names: c. division WWE3 bacterium RIFOXYB1_FULL_43_24, candidate division WWE3 bacterium RIFOXYB1_FULL_43_24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.