STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGC72059.130S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)    
Predicted Functional Partners:
OGC71822.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OGC71823.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.999
OGC72057.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.999
OGC72058.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OGC72060.1
Translation initiation factor IF-1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OGC72070.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OGC72071.1
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OGC72072.1
Translation elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OGC72073.1
Translation elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OGC72074.1
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
Your Current Organism:
candidate division WWE3 bacterium RIFOXYD1FULL4224
NCBI taxonomy Id: 1802651
Other names: c. division WWE3 bacterium RIFOXYD1_FULL_42_24, candidate division WWE3 bacterium RIFOXYD1_FULL_42_24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.