STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHE85354.1Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (706 aa)    
Predicted Functional Partners:
A2190_01485
TonB-dependent receptor; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
OHE85355.1
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.942
A2190_01505
Type II secretion system protein GspF; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.865
OHE85357.1
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.836
OHE85358.1
Type II secretion system protein K; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.807
OHE85618.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.800
OHE85359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.748
OHE84291.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.710
OHE85352.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
OHE85600.1
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.596
Your Current Organism:
Xanthomonadales bacterium RIFOXYA1FULL6910
NCBI taxonomy Id: 1802656
Other names: X. bacterium RIFOXYA1_FULL_69_10, Xanthomonadales bacterium RIFOXYA1_FULL_69_10
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