STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHE83874.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)    
Predicted Functional Partners:
A2190_07350
Acyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.956
OHE83875.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.954
OHE83876.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.855
OHE83870.1
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.808
OHE83882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
OHE83549.1
AMP-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
OHE83872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
OHE83883.1
Beta-ketoacyl-[acyl-carrier-protein] synthase II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.776
OHE83869.1
Pteridine-dependent deoxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
A2190_08045
Acyltransferase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.747
Your Current Organism:
Xanthomonadales bacterium RIFOXYA1FULL6910
NCBI taxonomy Id: 1802656
Other names: X. bacterium RIFOXYA1_FULL_69_10, Xanthomonadales bacterium RIFOXYA1_FULL_69_10
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