STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHE84651.1Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
A2190_10100
Cytochrome-c oxidase, cbb3-type subunit I; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
    0.672
OHE84648.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
OHE84649.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
OHE84650.1
Nitrite reductase, copper-containing; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase family.
       0.594
OHE84652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.486
OHE83080.1
Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.454
A2190_08190
Energy transducer TonB; Metagenomic; derived from metagenome: subsurface metagenome.
  
     0.437
tpm
Thiopurine S-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
   
 0.432
OHE84935.1
Methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
   
 0.432
ubiG
Bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.432
Your Current Organism:
Xanthomonadales bacterium RIFOXYA1FULL6910
NCBI taxonomy Id: 1802656
Other names: X. bacterium RIFOXYA1_FULL_69_10, Xanthomonadales bacterium RIFOXYA1_FULL_69_10
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