STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHA79115.1valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (713 aa)    
Predicted Functional Partners:
OHA79701.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
0.884
OHA79116.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.819
OHA79117.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.819
OHA79835.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
0.805
OHA79581.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.738
OHA79828.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.680
OHA79705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.674
OHA80000.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.662
OHA79614.1
threonine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.658
OHA79618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.658
Your Current Organism:
Yonathbacteria bacterium RIFCSPHIGHO201FULL4441
NCBI taxonomy Id: 1802722
Other names: C. Yonathbacteria bacterium RIFCSPHIGHO2_01_FULL_44_41, Candidatus Yonathbacteria bacterium RIFCSPHIGHO2_01_FULL_44_41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.