STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHA89163.1DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (1067 aa)    
Predicted Functional Partners:
OHA88196.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OHA88210.1
Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.999
OHA89520.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OHA89519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OHA89100.1
Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OHA88672.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
OHA89181.1
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OHA89162.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OHA89068.1
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OHA89051.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
Your Current Organism:
Zambryskibacteria bacterium RIFCSPHIGHO201FULL4327
NCBI taxonomy Id: 1802735
Other names: C. Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_43_27, Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_43_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.