STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY38784.1Hypothetical protein; [R] COG0457 FOG: TPR repeat; TPR repeat. (183 aa)    
Predicted Functional Partners:
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
     0.771
EDY38862.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.756
EDY39048.1
Rubredoxin; [C] COG1773 Rubredoxin.
  
   
 0.733
EDY37271.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.717
psaF
Photosystem I reaction center subunit III; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
   
 0.706
psaD
Photosystem I reaction center subunit II; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
   
 0.701
EDY38402.1
Putative eribonuclease P; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.682
EDY39679.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; cyAnobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
     0.675
EDY37971.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.662
EDY37699.1
PsbP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.653
Your Current Organism:
Cyanobium sp. PCC7001
NCBI taxonomy Id: 180281
Other names: Anacystis marina 6, C. sp. PCC 7001, Cyanobium sp. PCC 7001, Synechococcus sp. PCC 7001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.