STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicI_4Unannotated protein; Belongs to the glycosyl hydrolase 31 family. (688 aa)    
Predicted Functional Partners:
lacF_5
Unannotated protein.
 
     0.692
GCA_000797495_03533
Unannotated protein.
  
 
 0.659
sugB_3
Unannotated protein.
 
    0.629
GCA_000797495_03766
Unannotated protein.
     
 0.604
GCA_000797495_03512
Unannotated protein.
   
 
 0.602
GCA_000797495_03452
Unannotated protein.
  
 
 0.590
yicI_3
Unannotated protein; Belongs to the glycosyl hydrolase 31 family.
 
    
0.585
ugpB_1
Unannotated protein.
 
    0.580
treP
Unannotated protein.
 
  
  0.571
dmdA_2
Unannotated protein.
    
   0.565
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.