STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000797495_00346Unannotated protein. (1304 aa)    
Predicted Functional Partners:
nanB
Unannotated protein.
  
  
  0.574
nanA_1
Unannotated protein.
  
  
  0.520
chiA1_3
Unannotated protein.
  
  
  0.494
GCA_000797495_01239
Unannotated protein.
  
  
 0.479
GCA_000797495_00600
Unannotated protein.
  
  
  0.464
GCA_000797495_04343
Unannotated protein.
  
     0.435
nagH_4
Unannotated protein.
  
  
 0.423
GCA_000797495_02765
Unannotated protein.
 
  
  0.417
yopM
Unannotated protein.
  
     0.416
GCA_000797495_05089
Unannotated protein.
  
    0.409
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.